Agenda: Cell Modeling Workshop 2017
Workshop details: Home Agenda Instructors
This agenda is tentative and subject to change.
Monday, June 26 | |
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8:30 - 9:00 | Welcome and Introduction |
9:00 - 10:00 | Hands-on with CellBlender |
10:00 - 10:15 | Break |
10:15 - 11:15 | Basic models with CellBlender |
11:15 - 12:00 | Advanced models and parameter sweeps with CellBlender |
12:00 - 1:00 | Lunch Break (lunch will be provided) |
1:00 - 2:00 | Optimizing geometry with GAMer |
3:00 - 5:00 | Overview of MDL and pyMCell |
Tuesday, June 27 | |
8:30 - 9:15 | Introduction to Rule-Based Modeling (James Faeder) |
9:15 - 10:15 | Hands-on intro to RuleBender with basic models |
10:15 - 10:30 | Break |
10:30 - 11:00 | Continuing work with RuleBender |
11:00 - 12:00 | Developing a detailed model of CaMKII activation |
12:00 - 1:00 | Lunch Break (lunch will be provided) |
1:00 - 1:30 | Atomizer demo and hands-on |
1:30 - 2:00 | Visualization demo |
2:00 - 2:30 | Parameter estimation demo |
3:00-5:00 | Using MCell-R to perform spatial simulation of rule-based models |
Wednesday, June 28 | |
8:30 - 9:20 | Introduction to Generative Modeling with CellOrganizer |
9:20 - 10:00 | Working with Diffeomorphic Models |
10:00 - 10:30 | Break |
10:30 - 11:00 | Approaches to modeling protein distributions |
11:00 - 12:00 | Using CellOrganizer through Galaxy |
12:00 - 1:00 | Lunch Break (lunch will be provided) |
1:00 - 5:00 | Hands-on tutorials in Computer Training Center and/or work on your own projects |