Scientific Meetings
MMBioS Scientific Meetings
MMBioS Scientific Meetings are held monthly and feature presentations on new scientific and technological developments within the center. Meetings are open to MMBioS members and collaborators.
Scientific Meetings 2020
Adam Husar
MCell4 with Python API Status Update (TR&D2)
Scientific Meetings 2019
Mariam Ordyan
CaMKII, as a Molecular Switch: from Digital to Analog (TR&D2)
P.S. Thiagarajan
Statistical Model Checking Based Analysis of Biopathway Models (TR&D3)
Bing Liu
Potential Collaborations with Modeling Neurotransmission (TR&D1)
Mary Cheng
MCell Simulations of Amphetamine Reversal of Escalated Cocaine Intake (TR&D1)
Burak Kaynak
Incorporation of Spatially Extended Bodies in MCell (TR&D1)
Rachel Mendelsohn
Design principles of mitochondrial architecture in neurons (TR&D2)
Scientific Meetings 2018
Luca Ponzoni & Ivet Bahar
Structural dynamics is a determinant of the functional significance of missense variants (TR&D1)
Tom Bartol
Open Discussion of Plans for Spatially Structured Molecules in BioNetGen and MCell (TR&D2)
Sanjana Gupta
Evaluation of Parallel Tempering to Accelerate Bayesian Parameter Estimation in Systems Biology (TR&D3)
Robert Murphy
Learning the sequence of influenza A genome assembly during viral replication (TR&D4)
Oliver Ernst
Learning Dynamic Boltzmann Distributions as Reduced Models of Spatial Chemical Kinetics (TR&D2)
Xiangrui Zeng
A Template-free Pipeline for Recovering Structures in Cryo-electron Tomography (TR&D4)
Burak Kaynak
From Point Particles to Rigid Bodies in MCell (TR&D1)
Scientific Meetings 2017
Bing Liu
Model Checking Techniques for System Biology Modeling: A Case Study of Neurotransmission (TR&D1)
Kelvin Liu
Learning a Generative Model of Endoplasmic Reticulum Structure from Fluorescence Microscope Images (TR&D3)
Ernesto Suarez
Mechanism beyond Markov models: How and why to use non-Markovian analysis of trajectory data (TR&D1)
Natalie Sauerwald & She (John) Zhang
Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings (TR&D1)
Mary Cheng
Substrate transport and anion permeation proceed through distinct pathways in glutamate transporters (TR&D1)
Oliver Ernst
Machine Learning for Generalized Multiscale Modeling (TR&D2)
Cihan Kaya
Rule-based modeling of CaMKII dynamics: Subunit exchange and beyond (TR&D3)
Xiongtao Ruan
Generative modeling of cellular components with deep learning techniques (TR&D4)
Scientific Meetings 2016
Robert P. Sheehan, B.S. Quantitative Biology
A novel positive feedback loop sets a dose-dependent threshold for T cell differentiation. (TR&D2)
She (John) Zhang and Natalie Sauerwald
Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings (TR&D1)
Dr. Mary Cheng, Dr. Delany Torres-Salazar, Dr. Susan Amara & Dr. Ivet Bahar
Mechanism of chloride channeling by Excitatory Amino Acid Transporters (TR&D1)
Dr. Hongchun Li, Dr. Nanaocha Sharma, Dr. Ignacio General, Dr. Gideon Schreiber & Dr. Ivet Bahar
Dynamic Modulation of Binding Affinity as a Mechanism to Regulate Interferon Signaling (TR&D1)
Dr. James Faeder
MMBioS Update, TRD2 - Part 1 (TR&D2)
Scientific Meetings 2015
Dr. Gustavo Rohde
Numerical Methods for Modeling and Quantifying Shape Information of Biological Forms (TR&D3)
Scientific Meetings 2014
Dr. Sundar Subramanian
Monte Carlo Simulations on Mixed Resolution Protein Models (TR&D1)
Dr. Chris Langmead
Probabilistic Graphical Model Based Analysis and Modeling of Ensembles of Conformers (TR&D1)
Dr. Justin Spiriti
A New Strategy for Coarse-Grained Protein Simulations: Smoothed Energy Tables (TR&D1)
Dr. Bing Liu
A computational model for TLR3-TLR7 crosstalk reveals STAT1-mediated cytokine homeostasis (TR&D1 and TR&D2)